Cumulus
1.1.0
First Time Running
Latest and stable versions on Terra
Run Cell Ranger tools using cellranger_workflow
bcl2fastq
Run STARsolo to generate gene-count matrices from FASTQ files
Cell Ranger alternatives to generate gene-count matrices for 10X data
Extract gene-count matrices from plated-based SMART-Seq2 data
Drop-seq pipeline
Demultiplex genetic-pooling/cell-hashing/nucleus-hashing sc/snRNA-Seq data
Run Cumulus for sc/snRNA-Seq data analysis
Topic modeling
Run Terra pipelines via command line
Examples
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Cumulus
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v: 1.1.0
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