Cumulus
1.4.0
First Time Running
Latest and stable versions on Terra
Droplet-based single-cell assays
Run Cell Ranger tools using cellranger_workflow
Run Space Ranger tools using spaceranger_workflow
Run STARsolo to generate gene-count matrices from FASTQ files
Demultiplex genetic-pooling/cell-hashing/nucleus-hashing sc/snRNA-Seq data
Run Cumulus for sc/snRNA-Seq data analysis
Run Terra pipelines via command line
Examples
SMART-Seq2 and bulk RNA-seq
Extract gene-count matrices from plated-based SMART-Seq2 data
Bulk RNA-Seq
Drop-Seq pipeline
Drop-seq pipeline
Others
bcl2fastq
Cell Ranger alternatives to generate gene-count matrices for 10X data
Topic modeling
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Cumulus
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v: 1.4.0
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