Nanostring GeoMx DSP
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This section contains two workflows: **geomxngs_fastq_to_dcc** and **geomxngs_dcc_to_count_matrix**.

**geomxngs_fastq_to_dcc** workflow wraps `Nanostring GeoMx Digital Spatial NGS Pipeline`_ and can convert FASTQ files into DCC files.

**geomxngs_dcc_to_count_matrix** workflow takes the DCC zip file from **geomxngs_fastq_to_dcc** and other files produced by the GeoMx DSP machine as inputs, and outputs an area of illumination (AOI) by probe count matrix with pathologists' annotation.

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.. include:: geomxngs_fastq_to_dcc.rst

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.. include:: geomxngs_dcc_to_count_matrix.rst