Cumulus
First Time Running on Terra
Cumulus workflows overview
Import workflows to Terra
Release notes
Droplet-based single-cell assays
Run Cell Ranger tools using cellranger_workflow
Demultiplex genetic-pooling/cell-hashing/nucleus-hashing sc/snRNA-Seq data
Run STARsolo to generate gene-count matrices from FASTQ files
Run CellBender for ambient RNA removal
Run Cumulus for sc/snRNA-Seq data analysis
Run Terra pipelines via command line
Examples
Spatial transcriptomics
10x Visium
Nanostring GeoMx DSP
SMART-Seq2 and bulk RNA-seq
Extract gene-count matrices from plated-based SMART-Seq2 data
Bulk RNA-Seq
Contact
Contributions
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Cumulus
Index
Index