Cumulus
0.14.0
First Time Running
Latest and stable versions on Terra
Run Cell Ranger tools using cellranger_workflow
bcl2fastq
Cell Ranger alternatives to generate gene-count matrices for 10X data
Extract gene-count matrices from plated-based SMART-Seq2 data
Drop-seq pipeline
Demultiplex cell-hashing/nuclei-hashing data using demuxEM or prepare for CITE-Seq analysis
Run Cumulus for sc/snRNA-Seq data analysis
Demuxlet
Run Terra pipelines via command line
Examples
Contributions
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Cumulus
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Contributions
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We welcome contributions to our repositories that make up the Cumulus ecosystem:
pegasus
cumulus
cumulus_feature_barcoding
scPlot
altocumulus
cirrocumulus